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Thread | Thread Starter | Forum | Replies | Last Post |
Seeking advice on PathSeq | dbrazel | Bioinformatics | 56 | 03-04-2013 11:28 AM |
PathSeq launch problems | bioinfodude | Bioinformatics | 3 | 03-04-2013 11:25 AM |
tophat Error running running 'prep_reads' | victoryhe | Bioinformatics | 2 | 10-17-2011 05:53 AM |
PubMed: PathSeq: software to identify or discover microbes by deep sequencing of huma | Newsbot! | Literature Watch | 0 | 09-09-2011 03:00 AM |
Pathseq not in the cloud | lorddoskias | Bioinformatics | 0 | 07-28-2011 03:25 AM |
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#1 |
Member
Location: New England Join Date: Nov 2010
Posts: 27
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Hi,
New to pathSeq and I have to questions about running PathSeq. 1. In the cluster.config file, how do I set the directory for S3CMD? My system administror install the S3CMD for me, not sure if I could find the directory for S3CMD? 2. When I execute "create_ownAMI.com", I got the following error: $ source /home/mediator/PathSeq/Pathseq_cloud_May72014_hadoop1_0_3/create_ownAMI.com Creation of your Amazon Machine Image cp: cannot stat `cluster.config': No such file or directory -bash: /Build_OwnAMI/create-h-image: No such file or directory Creation completed rm: cannot remove `install_cross': No such file or directory rm: cannot remove `install_rlib': No such file or directory ![]() I really appreciate any help! Thanks in advance. |
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