02-12-2008, 11:30 PM
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Location: SF Bay Area, CA, USA
Join Date: Oct 2007
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Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
Expanding the ability of next gen sequencers, this group describes a primer bar coding system allowing simultaneous pooling of >1,500 samples.
Check it out here: http://www.ncbi.nlm.nih.gov/pubmed/18264105
Abstract below:
Quote:
Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R.
Department of Computer Science, UCB 430, University of Colorado, Boulder, Colorado 80309, USA.
We constructed error-correcting DNA barcodes that allow one run of a massively parallel pyrosequencer to process up to 1,544 samples simultaneously. Using these barcodes we processed bacterial 16S rRNA gene sequences representing microbial communities in 286 environmental samples, corrected 92% of sample assignment errors, and thus characterized nearly as many 16S rRNA genes as have been sequenced to date by Sanger sequencing.
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