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Old 01-26-2016, 10:06 AM   #1
deep639
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Default mm10 female mouse

I aligned samples from a female mouse to the mm10 genome, the samples were Illumina sequenced samples. After alignment, I found some reads aligned to chrY, are these reads false positive/artifacts. I read also that this can happen in human samples so could it be the same thing here in mouse? Thank you.
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Old 01-26-2016, 10:15 AM   #2
GenoMax
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MSY: doi:10.1016/j.cell.2014.09.052 (http://www.ncbi.nlm.nih.gov/pubmed/25417157)?
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Old 01-26-2016, 10:25 AM   #3
deep639
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thanks for the link
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