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Old 11-28-2010, 11:25 PM   #1
yjhua2110
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Location: china

Join Date: Nov 2009
Posts: 67
Default snoSeekerNGS: Discovering snoRNAs from pooled deep-sequencing data

Dear All,

We introduce a software package, snoSeekerNGS, for discovering snoRNAs from pooled deep sequencing data. snoSeekerNGS is an improved version of our snoSeeker.

SnoSeekerNGS is freely available from the following URL: http://deepbase.sysu.edu.cn/SnoSeekerNGS.php. Choose the appropriate platform for a binary distribution or a graphical user interface (GUI) distribution.

To enhance the quality of microRNA prediction softwares, snoSeekerNGS can serve as rapid and pre-processing filters in excluding snoRNAs (C/D snoRNAs and H/ACA snoRNAs).

snoSeekerNGS also can be used to explore microRNA-like snoRNAs and sno-derived small RNAs (sdRNAs).



This is the first version of snoSeekerNGS. We look forward to your feedback.

Thanks!
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Old 02-27-2013, 03:16 AM   #2
nis
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Location: france

Join Date: Feb 2013
Posts: 1
Default Problem with the methylation file

Hi,

I'm woorking on a project to identify snoRNAs with the WGS and i'm using the snoseeker programm but it doesn't accept a methylation file in format fasta, i tried to organize it as that in the "CE_all_methylation file" but it doesn't woork, i can't register it with sites extention. Could you explain me how it should be done?

Thank you
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