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Old 09-11-2015, 06:58 AM   #1
cmccabe
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Location: chicago

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Default ion torrent alignment

I have genomic resequencing medical exome data (~4500) sequenced on an ion torrent proton. In terms of alignment, besides TMAP, any thoughts on samtools, bwa-mem, bowtie2, novalign, etc... maybe a publication or user experience. Thank you .
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