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Old 11-02-2015, 03:28 AM   #1
Flo89
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Location: Aarhus

Join Date: Sep 2015
Posts: 5
Default Filtering BWA mem

Hi guys,

I have a question regarding to the filtering method of bwa mem.
I am not sure if bwa mem is able to map very short fractions (kind of local alignments) to a reference.

Actually, I know that it tries to map supermaximal exact matches (SMEMs).

Do you know more about the filtering method ?

Best,
Flo
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