Hello,
I've worked on the comparison of a normal sample and a tumor sample in cancer data. I wanted to perform a direct comparison to detect somatic mutations, so I used VarScan2.
Now, I would like to compare 2 tumor samples, one untreated and one treated, in order to study the impact of a treatment.
I don't know if I can use VarScan2 here again, for a direct comparison. Maybe, the model is not suitable. I'm thinking about performing an independent analysis on both samples, but I would prefer a simultaneous comparison... I would like to ask you how do you do?
Thank you for your feedback,
Jane
I've worked on the comparison of a normal sample and a tumor sample in cancer data. I wanted to perform a direct comparison to detect somatic mutations, so I used VarScan2.
Now, I would like to compare 2 tumor samples, one untreated and one treated, in order to study the impact of a treatment.
I don't know if I can use VarScan2 here again, for a direct comparison. Maybe, the model is not suitable. I'm thinking about performing an independent analysis on both samples, but I would prefer a simultaneous comparison... I would like to ask you how do you do?
Thank you for your feedback,
Jane
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