SEQanswers

Go Back   SEQanswers > Applications Forums > Metagenomics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Untangling Genomes from Metagenomes kmcallenberg Literature Watch 0 02-15-2012 07:46 PM
Publicly available FASTA Database ? kursuni Bioinformatics 15 09-30-2011 01:49 AM
Publicly available NGS data? tldgID Bioinformatics 10 05-25-2011 03:11 PM
Publicly available test NGS exome? emucaki Bioinformatics 3 01-19-2011 06:23 AM
Real biological 454 data publicly available for benchmarking Springbok28 454 Pyrosequencing 1 11-26-2009 12:48 AM

Reply
 
Thread Tools
Old 03-15-2012, 11:43 PM   #1
metagUser
Junior Member
 
Location: India

Join Date: Mar 2012
Posts: 3
Default Publicly available Illumina metagenomes

Hi Friends,

I want to test some of our computational tools on real world metagenomes. I am able to find many Sanger and 454 metagenomes but not an ideal Illumina one. By 'ideal', what I mean is a metagenome with number of reads in between one to ten million. Our computational resources are not sufficient enough to deal with datasets larger than the above limit. It will be much appreciated if you suggest me on such publicly available Illumina metagenome (please provide the link).

Thank you guys...
metagUser is offline   Reply With Quote
Old 03-26-2012, 04:08 AM   #2
colindaven
Senior Member
 
Location: Germany

Join Date: Oct 2008
Posts: 415
Default

Goto NCBI SRA
Search "illumina metagenome"
colindaven is offline   Reply With Quote
Old 03-27-2012, 12:16 AM   #3
metagUser
Junior Member
 
Location: India

Join Date: Mar 2012
Posts: 3
Default

Thank you colindaven, that really helped ...
metagUser is offline   Reply With Quote
Reply

Tags
illumina, metagnome, real world

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 04:51 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO