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Old 02-28-2014, 08:10 AM   #1
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Default from gene symbols to a BED file with TSS positions

Hi all

I have a list of gene symbols (in excel or txt file) and I would like to get a BED file containing all the TSS positions of that list.
How can I do that?

idogold is offline   Reply With Quote
Old 02-28-2014, 09:55 AM   #2
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Location: US

Join Date: Feb 2013
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Have you tried biomaRt package in R? Have found it very useful for such purposes.
I think you might be able to use their site by uploading your file and foramtiing accordingly as the BED file.
hari_iyer16 is offline   Reply With Quote

bed, gene symbol, tss

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