Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
quality problem when mapping with gMap lixiangru Bioinformatics 1 11-16-2011 07:40 PM
Compute the consensus quality, SNP quality in SAMTools lyz1030 Bioinformatics 0 04-13-2011 06:09 PM
Max Mapping / SNP / Consensus Quality in pileup files agc Bioinformatics 1 11-22-2010 07:42 AM
What cut off does GATK snp calling use for mapping quality score? foxyg Bioinformatics 0 09-25-2010 12:19 PM
Threshold quality score to determine the quality read of ILLUMINA reads problem edge General 1 09-13-2010 03:22 PM

Thread Tools
Old 12-23-2009, 01:22 PM   #1
Location: dublin

Join Date: Oct 2008
Posts: 10
Default SNP mapping quality problem

Hi everyone,

I use glfProgs package calling SNP.
And at the output file, the 5th column is Phred-like consensus quality.
Is anyone can tell me how to calculate the consenses mapping quality ( like the MAQ's mapping quality ) by Phred-like consensus quality ?

thanks a million.
ptong7 is offline   Reply With Quote

snp mapping quality

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 09:36 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO