Go Back   SEQanswers > Applications Forums > RNA Sequencing

Similar Threads
Thread Thread Starter Forum Replies Last Post
Best control in RNAseq for homozygous mutant in transgenic background MichelaG RNA Sequencing 1 12-11-2014 04:03 PM
RNAseq, GO enrichment, and length bias correction lukas1848 Bioinformatics 3 01-22-2014 05:13 AM
Comparison of SNPs between case and control sample Maulik23 Bioinformatics 2 01-21-2014 04:31 AM

Thread Tools
Old 04-15-2019, 04:34 AM   #1
Junior Member
Location: Europe

Join Date: Dec 2018
Posts: 4
Default Control-based correction in multispecies RNAseq comparison

Hi all!

I think this issue fits better here than on another forum I posted this question some time ago:

In a multispecies gene expression comparison (per species one control group and 3 treatments) I want to compare the gene expression patterns of specific gene families. For this I want to correct the expression levels of these genes per species using the control group. In this way you get the percentage difference in expression of the genes for each treatment in comparison to the control treatment, and I can compare the gene expression levels of the different species directly instead of only looking at within species patterns and comparing both.

I have not seen a similar approach in other multi-species RNAseq studies. Are there perhaps similar studies or papers dealing with a multispecies comparison of RNAseq data that I have overlooked?

Like to hear your opinion!
Tsequencing is offline   Reply With Quote
Old 04-15-2019, 05:38 AM   #2
Location: Louisiana

Join Date: Nov 2013
Posts: 38

Sounds logical, but not sure. This article might be of interest...

Gopo is offline   Reply With Quote
Old 04-29-2019, 08:12 AM   #3
Junior Member
Location: Europe

Join Date: Dec 2018
Posts: 4

Ah! Thanks for the suggestion, I will give it a try.
Tsequencing is offline   Reply With Quote
Old 04-29-2019, 11:24 AM   #4
Junior Member
Location: united kingdom

Join Date: Apr 2019
Posts: 1

thank you will try it
intense x reviews best male enhance pills reviews
INTENSE X is offline   Reply With Quote

comparison, expression levels, multispecies, rnaseq

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:46 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO