Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Best way to obtain a keyword-guided overview of gene expression for a small gene set?

    Hello,
    I'm looking for a tool (best if it's easy to use over the web), where I
    can provide a small set of genes (e.g. 10 HUGO gene names) and a keyword as input,
    and the output is a table of expression values of these genes for as many
    publicly available gene expression datasets as possible that are matching
    the keyword. For example, the keyword may be "replicative senescence".

    I assume that not enough gene expression datasets are formally annotated
    by keywords, e.g. by using an experimental factor ontology, but maybe
    there is a resource which does that, but I'm not aware of it.
    It would be nice (but it's not a major thing) if microarray and RNA-Seq
    data can be separated; in the end I would want to inspect the details
    of the source gene expression datasets in a manual way anyway.
    Thanks for any hints
    georg

Latest Articles

Collapse

  • seqadmin
    Strategies for Sequencing Challenging Samples
    by seqadmin


    Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
    03-22-2024, 06:39 AM
  • seqadmin
    Techniques and Challenges in Conservation Genomics
    by seqadmin



    The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

    Avian Conservation
    Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
    03-08-2024, 10:41 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, 03-27-2024, 06:37 PM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-27-2024, 06:07 PM
0 responses
11 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-22-2024, 10:03 AM
0 responses
52 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-21-2024, 07:32 AM
0 responses
68 views
0 likes
Last Post seqadmin  
Working...
X