Hello All,
Have you seen a pileup file like this?
chr1 862 N G 4 0 3 1 ^$G 8
chr1 863 N C 4 0 3 1 C 8
chr1 864 N A 4 0 3 1 A 8
chr1 865 N A 4 0 3 1 A 9
chr1 866 N G 4 0 3 1 G 8
chr1 867 N C 4 0 3 1 C /
chr1 868 N C 4 0 3 1 C 5
chr1 869 N T 4 0 3 1 T *
chr1 870 N A 8 0 4 2 A^&A 58
chr1 871 N C 8 0 4 2 CC 53
This is ten rows of my file, actually all the data in chr1 look like this.
I used $ samtools pileup -f chr1.fa -c sample.chr1.bam > sample.chr1.raw.txt.
Thank you very much!
Wu
Have you seen a pileup file like this?
chr1 862 N G 4 0 3 1 ^$G 8
chr1 863 N C 4 0 3 1 C 8
chr1 864 N A 4 0 3 1 A 8
chr1 865 N A 4 0 3 1 A 9
chr1 866 N G 4 0 3 1 G 8
chr1 867 N C 4 0 3 1 C /
chr1 868 N C 4 0 3 1 C 5
chr1 869 N T 4 0 3 1 T *
chr1 870 N A 8 0 4 2 A^&A 58
chr1 871 N C 8 0 4 2 CC 53
This is ten rows of my file, actually all the data in chr1 look like this.
I used $ samtools pileup -f chr1.fa -c sample.chr1.bam > sample.chr1.raw.txt.
Thank you very much!
Wu
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