Hi,
I'm trying to assemble six SMRT cells de novo on the SMRT portal. I tried HGAP.2 and HGAP.3 but both fail with different errors:
CeleraAssembler/runCaHgap Failed - for HGAP.2
AssembleUnitig/runCaToUnitig Failed - for HGAP.3
I'm running SMRT portal through Amazon Web Services.
On the PacBio github it provides troubleshooting information for the SMRT pipe but I'm unsure how to access this through AWS.
Any information on how to troubleshoot this would be much appreciated.
James
I'm trying to assemble six SMRT cells de novo on the SMRT portal. I tried HGAP.2 and HGAP.3 but both fail with different errors:
CeleraAssembler/runCaHgap Failed - for HGAP.2
AssembleUnitig/runCaToUnitig Failed - for HGAP.3
I'm running SMRT portal through Amazon Web Services.
On the PacBio github it provides troubleshooting information for the SMRT pipe but I'm unsure how to access this through AWS.
Any information on how to troubleshoot this would be much appreciated.
James
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