Dear all,
I work on a plant without genome sequences, and got a large amount of 454 RNA-seqs.
Right now I am trying to identify the indels abover 50 nt among these ESTs. I am appreciated if anyone could give me the suggestion on program to solve my problem.
I already tried Blat and Megablast, but they would break into more than one alignments if there are indel above 50 nt.
Thanks
Hanhan
I work on a plant without genome sequences, and got a large amount of 454 RNA-seqs.
Right now I am trying to identify the indels abover 50 nt among these ESTs. I am appreciated if anyone could give me the suggestion on program to solve my problem.
I already tried Blat and Megablast, but they would break into more than one alignments if there are indel above 50 nt.
Thanks
Hanhan
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