gff file includes the fasta sequence at the end

gretagecse · 09-02-2019, 01:04 AM

Hi all,

i received a gff file of a whole genome I am working with, and unexpectedly I found the nucleotide sequence at the end of the file. Is it a common thing

Cheers,
G

Gopo · 09-02-2019, 01:42 AM

No this is not common, but MAKER's (http://www.yandell-lab.org/software/maker.html) gff3_merge script can output a GFF file with FASTA sequence at the end.

gretagecse · 09-02-2019, 06:28 AM

Thanks a lot!

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09-02-2019, 01:04 AM	#1
gretagecse Junior Member Location: Denmark Join Date: May 2019 Posts: 3	gff file includes the fasta sequence at the end Hi all, i received a gff file of a whole genome I am working with, and unexpectedly I found the nucleotide sequence at the end of the file. Is it a common thing Cheers, G

09-02-2019, 01:42 AM	#2
Gopo Member Location: Louisiana Join Date: Nov 2013 Posts: 38	No this is not common, but MAKER's (http://www.yandell-lab.org/software/maker.html) gff3_merge script can output a GFF file with FASTA sequence at the end.

09-02-2019, 06:28 AM	#3
gretagecse Junior Member Location: Denmark Join Date: May 2019 Posts: 3	Thanks a lot!