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Old 10-15-2021, 06:43 AM   #1
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Default how do I know if an assembling covered the most genome

After assembling bacterial WGS reads from an Illumina 2 x 300 sequencing, how do I know if the contigs cover the most part of the whole genome?
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Old 10-15-2021, 11:40 AM   #2
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You can align your contigs to the genome sequence and check. A program like Mauve also comes in handy to check the coverage visually.
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