|
|
|
|||||||
Similar Threads
|
||||
| Thread | Thread Starter | Forum | Replies | Last Post |
| Mg-rast --> megan | ewilbanks | Metagenomics | 5 | 12-06-2014 04:08 PM |
| Custom Blast database for MEGAN metagenomics | OllyBolly | Bioinformatics | 2 | 12-19-2012 11:19 PM |
| how to use sam files in MEGAN metagenomics | chris_bioinfo | Bioinformatics | 8 | 09-03-2012 07:29 AM |
| RAST annotation --> Artemis | Bacteria Genomes | Bioinformatics | 15 | 08-25-2011 12:37 PM |
 |
|
|
Thread Tools |
03-10-2013, 12:40 PM
|
#1 |
|
Member
Location: Davis, CA Join Date: Mar 2009
Posts: 82
|
Metagenomics - MG-RAST --> MEGAN
Does anyone if it's possible to grab output from MG-RAST's pipeline and feed it into MEGAN?
The all vs. all BLAST search required for my metagenomic dataset would be hideous on our servers and I was hoping to use something MG-RAST generates. I have some downstream analysis better done in MEGAN and essentially just want to use MG-RAST for its annotation and BLAST searches. Ideas anyone? Thanks! |
|
|
|
| Tags |
| blast, megan, metagenomics |
| Thread Tools | |
|
|
