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Old 03-10-2013, 12:40 PM   #1
Location: Davis, CA

Join Date: Mar 2009
Posts: 82
Default Metagenomics - MG-RAST --> MEGAN

Does anyone if it's possible to grab output from MG-RAST's pipeline and feed it into MEGAN?

The all vs. all BLAST search required for my metagenomic dataset would be hideous on our servers and I was hoping to use something MG-RAST generates. I have some downstream analysis better done in MEGAN and essentially just want to use MG-RAST for its annotation and BLAST searches.

Ideas anyone?

ewilbanks is offline   Reply With Quote

blast, megan, metagenomics

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