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Old 04-02-2010, 07:54 PM   #1
Location: china

Join Date: Jan 2010
Posts: 13
Red face Help for output of samtools pile up

chr10 1088075 t W 2 2 60 2 ,$n aD

I have an question about output of samtools pileup,IN row 8 I'am get that it mean one base is T,but what means by "n" when the query genetype "W"? is that "n" mean that locus just as a gap or others ?can you help me !

Last edited by baby1885; 04-03-2010 at 09:59 PM.
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Old 01-18-2011, 12:28 PM   #2
Location: Heidelberg, Germany

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Try here
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