Go Back   SEQanswers > Introductions

Similar Threads
Thread Thread Starter Forum Replies Last Post
fasta sequence: 0 based or 1 based index ardmore Bioinformatics 8 11-15-2011 09:23 AM
how to create junctions file based off reference zorph Bioinformatics 0 11-08-2011 08:42 AM
Create one sequence based on overlapping primer sequences in amplicon ketan_bnf Bioinformatics 2 09-15-2011 12:33 AM
How to create GC% track for IGV? pmiguel Bioinformatics 3 05-18-2011 06:50 AM
HOW to create image like this? zcrself Illumina/Solexa 1 09-21-2010 04:38 AM

Thread Tools
Old 02-16-2011, 08:19 AM   #1
Location: Texas

Join Date: May 2010
Posts: 13
Default create pileup based on chromosome

Is there a way to create chromosome based pileup output using samtools?
something like...
samtools pileup -cvf file.bam chr1...
unagaswamy is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 02:07 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO