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Old 03-27-2012, 12:29 PM   #1
Location: Frankfurt(M), Germany

Join Date: Jan 2011
Posts: 58
Default Reference-guided scaffolding Bambus2

Dear all,
I just assembled one genome using Illumina paired end reads with velvet assembler. Now I want to do the reference-guided scaffolding using Bambus2, Do anyone knows how to feed the link .xml file generated by MUMmer to the Bambus2? I will really appreciate your response.
Thanks in advance,
Rahul Sharma,
Frankfurt am Main, Germany
rahularjun86 is offline   Reply With Quote
Old 06-01-2012, 01:31 PM   #2
Location: college station

Join Date: Jan 2012
Posts: 22

I have exactly the same question. How to generate the contig link file by aligning the contigs to the ref with, say, nucmer?
melop is offline   Reply With Quote

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