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  • Blast error when choosing m8

    When I was running blastall -p blastn and choosing m8 as the output format, I was told as follows

    [blastall] ERROR: ncbiapi [000.000] SEQTITLE: BioseqFindFunc: couldn't uncache

    If I changed the output format to m1, the error message disappeared.

    Is there anyone who can tell me how to deal with it?

    Thanks!

  • #2
    Are you using an older version of blast package? Did you create the blast index files yourself?

    Comment


    • #3
      Originally posted by GenoMax View Post
      Are you using an older version of blast package? Did you create the blast index files yourself?
      Yes, I used the newest one 2.2.9 and made the database myself

      Comment


      • #4
        Are you running the older "legacy_blast.pl" script or using the new blastn -task blastn command line. If it is the latter then should you not be using -outfmt '6'?

        Can you post your actual command line?

        Comment


        • #5
          Thanks! I havbe solved the problem. I downloaded the most recent version 2.2.26 and successfully run it.

          Comment


          • #6
            Thanks!

            Originally posted by GenoMax View Post
            Are you using an older version of blast package? Did you create the blast index files yourself?
            Thanks! I havbe solved the problem. I downloaded the most recent version 2.2.26 and successfully run it.

            Comment

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