Hi,
I am running DEXseq on R 3.3 and get the following warning:
for multiple (if not all) genes.
When I run the same script on an iMac, It runs with no warnings.
the two SessionInfo() are below.
any ideas, why this happening?
Is it safe to ignore (as it is "only" a warning)?
thanks
Assa
##### Ubuntu
##### on the iMac #####
I am running DEXseq on R 3.3 and get the following warning:
Code:
Fit for gene/exon ***** threw the next warning(s): restarting interrupted promise evaluation
When I run the same script on an iMac, It runs with no warnings.
the two SessionInfo() are below.
any ideas, why this happening?
Is it safe to ignore (as it is "only" a warning)?
thanks
Assa
##### Ubuntu
Code:
> sessionInfo() R version 3.3.0 (2016-05-03) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.4 LTS locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets [8] methods base other attached packages: [1] readr_0.2.2 DEXSeq_1.18.4 [3] RColorBrewer_1.1-2 AnnotationDbi_1.34.3 [5] DESeq2_1.12.3 SummarizedExperiment_1.2.3 [7] GenomicRanges_1.24.2 GenomeInfoDb_1.8.1 [9] IRanges_2.6.1 S4Vectors_0.10.1 [11] Biobase_2.32.0 BiocGenerics_0.18.0 [13] BiocParallel_1.6.2 loaded via a namespace (and not attached): [1] Rcpp_0.12.5 plyr_1.8.4 XVector_0.12.0 [4] bitops_1.0-6 tools_3.3.0 zlibbioc_1.18.0 [7] biomaRt_2.28.0 statmod_1.4.24 rpart_4.1-10 [10] annotate_1.50.0 RSQLite_1.0.0 gtable_0.2.0 [13] lattice_0.20-33 Matrix_1.2-6 DBI_0.4-1 [16] gridExtra_2.2.1 stringr_1.0.0 hwriter_1.3.2 [19] genefilter_1.54.2 cluster_2.0.4 Biostrings_2.40.2 [22] locfit_1.5-9.1 grid_3.3.0 nnet_7.3-12 [25] data.table_1.9.6 XML_3.98-1.4 survival_2.39-4 [28] foreign_0.8-66 latticeExtra_0.6-28 Formula_1.2-1 [31] magrittr_1.5 geneplotter_1.50.0 ggplot2_2.1.0 [34] Rsamtools_1.24.0 Hmisc_3.17-4 scales_0.4.0 [37] splines_3.3.0 colorspace_1.2-6 xtable_1.8-2 [40] stringi_1.1.1 acepack_1.3-3.3 RCurl_1.95-4.8 [43] munsell_0.4.3 chron_2.3-47
Code:
> sessionInfo() R version 3.2.3 (2015-12-10) Platform: x86_64-apple-darwin13.4.0 (64-bit) Running under: OS X 10.11.5 (El Capitan) locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 attached base packages: [1] stats4 parallel stats graphics grDevices utils datasets methods base other attached packages: [1] readr_0.2.2 DEXSeq_1.16.10 DESeq2_1.10.1 RcppArmadillo_0.6.700.3.0 [5] Rcpp_0.12.5 SummarizedExperiment_1.0.2 GenomicRanges_1.22.4 GenomeInfoDb_1.6.3 [9] IRanges_2.4.8 S4Vectors_0.8.11 Biobase_2.30.0 BiocGenerics_0.16.1 [13] BiocParallel_1.4.3 loaded via a namespace (and not attached): [1] genefilter_1.52.1 statmod_1.4.24 locfit_1.5-9.1 splines_3.2.3 lattice_0.20-33 [6] colorspace_1.2-6 survival_2.39-2 XML_3.98-1.4 foreign_0.8-66 DBI_0.3.1 [11] RColorBrewer_1.1-2 lambda.r_1.1.7 plyr_1.8.3 stringr_1.0.0 zlibbioc_1.16.0 [16] Biostrings_2.38.4 munsell_0.4.3 gtable_0.2.0 futile.logger_1.4.1 hwriter_1.3.2 [21] latticeExtra_0.6-28 geneplotter_1.48.0 biomaRt_2.26.1 AnnotationDbi_1.32.3 acepack_1.3-3.3 [26] xtable_1.8-2 scales_0.4.0 Hmisc_3.17-3 annotate_1.48.0 XVector_0.10.0 [31] Rsamtools_1.22.0 gridExtra_2.2.1 ggplot2_2.1.0 stringi_1.0-1 grid_3.2.3 [36] tools_3.2.3 bitops_1.0-6 magrittr_1.5 RCurl_1.95-4.8 RSQLite_1.0.0 [41] Formula_1.2-1 cluster_2.0.4 futile.options_1.0.0 Matrix_1.2-5 rpart_4.1-10 [46] nnet_7.3-12
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