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Old 04-12-2010, 04:53 AM   #1
Junior Member
Location: UK

Join Date: Jan 2009
Posts: 4
Default Next Generation Sequencing workshop at EBI

Next month, from 12-14 May 2010, a Next Generation Sequencing workshop
will be held at the EBI in Hinxton, UK.

Topics to be covered include the Sequence Read Archive, Velvet /
Curtain, SOLiD, SHRiMP and Cortex.

For more detailed information and how to register, please have a look at:
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Old 04-12-2010, 01:23 PM   #2
Location: Hamilton NZ

Join Date: Feb 2010
Posts: 13

Has any information on the "Cortex de Bruijn-based assembly and variant-calling framework" been made public? It sounds very useful!
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Old 04-13-2010, 12:11 AM   #3
Location: Oxford

Join Date: Apr 2010
Posts: 51

Hi there. We'll be making Cortex (and documentation) publicly available in the near future (certainly before the workshop mentioned above). When we do, we'll be sure to mention it on SeqAnswers
Zam Iqbal (replying on behalf of myself and Mario Caccamo)
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Old 11-03-2010, 03:56 AM   #4
Peter (Biopython etc)
Location: Dundee, Scotland, UK

Join Date: Jul 2009
Posts: 1,543

Mario Caccamo was up in Edinburgh yesterday for another Cortex demo:

I'm not 100% sure if he and Zam have actually made an official release, so I won't post a link to the download we used. I think Mario said they'd be setting up a sourceforge page soon...
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Old 11-04-2010, 01:22 AM   #5
Location: Oxford

Join Date: Apr 2010
Posts: 51
Default that's right...

...we are making the official release on sourceforge soon. Sorry for the delay..
Zam is offline   Reply With Quote

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