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Old 02-16-2017, 06:03 AM   #1
cam687
Junior Member
 
Location: UK

Join Date: Dec 2016
Posts: 2
Default Meaning of UCSC annotation within one intron

Hi,

I am using the mm10 annotation from UCSC, downloaded for Homer ( http://homer.salk.edu/homer/data/genomes/mm10.v5.7.zip)

I'd like to understand what's the number after the parentheses (i.e. in this case, 2 and 3):

Code:
grep 'NM_001270494, intron 1 of 1).1'  mm10.full.annotation | wc -l
0

grep 'NM_001270494, intron 1 of 1).2'  mm10.full.annotation | wc -l
3

grep 'NM_001270494, intron 1 of 1).3'  mm10.full.annotation | wc -l
163

in the last example, the names are
Code:
intron (NM_001270494, intron 1 of 1).3--n
where n goes from 2 to 163, e.g.

Code:
intron (NM_001270494, intron 1 of 1).3--133
I've tried to do my research, but it's quite a difficult thing to describe it to google... Thanks in advance.
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