Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
How to create a BLAST database aliealexandre Bioinformatics 22 02-02-2015 03:34 AM
tophat with/without annotation,and cufflink with annotation? louis7781x Bioinformatics 19 04-05-2013 07:09 AM
[DESeq] invalid class "CountDataSet" object Azazel Bioinformatics 4 11-08-2011 12:34 AM
How to create a GRangesList object for genome not from UCSC? dicty Bioinformatics 2 02-16-2011 06:51 AM
HOW to create image like this? zcrself Illumina/Solexa 1 09-21-2010 04:38 AM

Thread Tools
Old 02-04-2011, 10:33 AM   #1
Location: us

Join Date: Nov 2010
Posts: 28
Default how to create an annotation object

I'm still new in sequence analysis.

I downloaded a virus genome sequence from NCBI and would like to create an annotation object with R package GenomicFeatures. However, the genome sequence is from NCBI, not UCSC.

How to create annotation object if the genome sequence is not from UCSC?

The genome is annotated. How could I find the annotation file? I only found the genome sequence file in fasta.

I'm not familiar with sequence analysis tools. Any advice would be sincerely appreciated.

Thank you very much in advance.

dicty is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 07:14 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO