SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
Gene ontology enrichment analysis tool rozitaa Bioinformatics 15 02-17-2015 05:50 AM
Gene ontology clustering neant Bioinformatics 0 12-12-2013 10:45 AM
Gene Ontology Graphs Quat Bioinformatics 3 09-06-2012 07:35 AM
gene ontology ssing Bioinformatics 1 02-22-2012 04:24 AM
window cutoff for nearest gene (gene ontology) repinementer Bioinformatics 1 11-22-2010 04:40 PM

Reply
 
Thread Tools
Old 01-02-2014, 03:15 PM   #1
Palgrave
Member
 
Location: norway

Join Date: Aug 2011
Posts: 73
Default Gene Ontology visualization tool.

What is the best tool for analyzing and visualazing gene ontologies at the moment? Any good suggestion?
Palgrave is offline   Reply With Quote
Old 01-02-2014, 03:26 PM   #2
RyNkA
Member
 
Location: Brisbane

Join Date: Jul 2013
Posts: 20
Default

I personally think that WEGO (http://wego.genomics.org.cn/) is kinda widely used at the moment. I did also use CateGOrizer and quite satisfy with that (http://www.animalgenome.org/tools/catego/). Others including DAVID is also really good in analyzing GO http://david.abcc.ncifcrf.gov/
RyNkA is offline   Reply With Quote
Old 08-14-2014, 06:13 PM   #3
pengchy
Senior Member
 
Location: China

Join Date: Feb 2009
Posts: 116
Default

The same question, more detail:

I have the gene ontology annotation file in obo format and gene association file in gaf2 format. I want to visualize them with the purpose:
1. how many and what genes were assigned to one GO term?
2. How many and what GO terms assigned to one specific gene? And the relation between these terms.
3. Multiple GO terms or Genes searching, output the resulted GO DAG graph
pengchy is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 08:36 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO