Hi,
I am stuck with RepeatModeler with error:
eleredef failed. Exit code 768
Here is the full log:
Anyone else encountered this problem and any potential solution?
Thanks.
I am stuck with RepeatModeler with error:
eleredef failed. Exit code 768
Here is the full log:
HTML Code:
/software/RepeatModeler/RepeatModeler -database test.txt -pa 10 RepeatModeler Version open-1.0.8 ================================ Search Engine = ncbi Database = test.txt . - Sequences = 2 - Bases = 2072880 Using output directory = /local/scratch/repeat_related/repeatmodeler/RM_16928.MonMar21132272015 RepeatModeler Round # 1 ======================== Searching for Repeats -- Sampling from the database... - Gathering up to 40000000 bp - Final Sample Size = 2072880 bp ( 2020122 non ambiguous ) - Num Contigs Represented = 2 -- Running RepeatScout on the sequences... - RepeatScout: Running build_lmer_table ( l = 12 ).. - RepeatScout: Running RepeatScout.. Program duration is 43.0 sec = 0.7 min = 0.0 hr NOTE: RepeatScout did not return any models. RepeatModeler Round # 2 ======================== Searching for Repeats -- Sampling from the database... - Gathering up to 3000000 bp -- Running TRFMask on the sequence... 144 Tandem Repeats Masked -- Sample Stats: Sample Size 2072880 bp Num Contigs Represented = 2 Non ambigous bp: Initial: 2020122 bp After Masking: 1892786 bp Masked: 6.30 % -- Input Database Coverage: 2072880 bp out of 2072880 bp ( 100.00 % ) Sampling Time: 0:0:14 Elapsed Time Running all-by-other comparisons... 0% completed, 00:3:19 (hh:mm:ss) est. time remaining. 0% completed, 00:2:22 (hh:mm:ss) est. time remaining. 0% completed, 00:1:40 (hh:mm:ss) est. time remaining. 0% completed, 00:1:09 (hh:mm:ss) est. time remaining. 0% completed, 00:0:52 (hh:mm:ss) est. time remaining. 0% completed, 00:0:42 (hh:mm:ss) est. time remaining. 0% completed, 00:0:34 (hh:mm:ss) est. time remaining. 0% completed, 00:0:31 (hh:mm:ss) est. time remaining. 0% completed, 00:0:28 (hh:mm:ss) est. time remaining. 0% completed, 00:0:24 (hh:mm:ss) est. time remaining. 0% completed, 00:0:27 (hh:mm:ss) est. time remaining. 0% completed, 00:0:26 (hh:mm:ss) est. time remaining. 0% completed, 00:0:24 (hh:mm:ss) est. time remaining. 0% completed, 00:0:21 (hh:mm:ss) est. time remaining. 0% completed, 00:0:21 (hh:mm:ss) est. time remaining. 0% completed, 00:0:19 (hh:mm:ss) est. time remaining. 0% completed, 00:0:17 (hh:mm:ss) est. time remaining. 0% completed, 00:0:16 (hh:mm:ss) est. time remaining. 0% completed, 00:0:14 (hh:mm:ss) est. time remaining. 0% completed, 00:0:13 (hh:mm:ss) est. time remaining. 0% completed, 00:0:14 (hh:mm:ss) est. time remaining. 0% completed, 00:0:13 (hh:mm:ss) est. time remaining. 0% completed, 00:0:12 (hh:mm:ss) est. time remaining. 0% completed, 00:0:11 (hh:mm:ss) est. time remaining. 0% completed, 00:0:10 (hh:mm:ss) est. time remaining. 0% completed, 00:0:09 (hh:mm:ss) est. time remaining. 0% completed, 00:0:08 (hh:mm:ss) est. time remaining. 0% completed, 00:0:07 (hh:mm:ss) est. time remaining. 0% completed, 00:0:06 (hh:mm:ss) est. time remaining. 0% completed, 00:0:05 (hh:mm:ss) est. time remaining. 0% completed, 00:0:05 (hh:mm:ss) est. time remaining. 0% completed, 00:0:05 (hh:mm:ss) est. time remaining. 0% completed, 00:0:04 (hh:mm:ss) est. time remaining. 0% completed, 00:0:04 (hh:mm:ss) est. time remaining. 0% completed, 00:0:03 (hh:mm:ss) est. time remaining. 0% completed, 00:0:03 (hh:mm:ss) est. time remaining. 0% completed, 00:0:02 (hh:mm:ss) est. time remaining. 0% completed, 00:0:02 (hh:mm:ss) est. time remaining. 0% completed, 00:0:01 (hh:mm:ss) est. time remaining. 0% completed, 00:0:01 (hh:mm:ss) est. time remaining. 0% completed, 00:0:01 (hh:mm:ss) est. time remaining. 0% completed, 00:0:01 (hh:mm:ss) est. time remaining. 0% completed, 00:0:01 (hh:mm:ss) est. time remaining. 0% completed, 00:0:01 (hh:mm:ss) est. time remaining. 0% completed, 00:0:01 (hh:mm:ss) est. time remaining. 0% completed, 00:0:00 (hh:mm:ss) est. time remaining. 0% completed, 00:0:00 (hh:mm:ss) est. time remaining. 0% completed, 00:0:00 (hh:mm:ss) est. time remaining. 0% completed, 00:0:00 (hh:mm:ss) est. time remaining. 0% completed, 00:0:00 (hh:mm:ss) est. time remaining. 100% completed, 00:0:00 (hh:mm:ss) est. time remaining. Comparison Time: 0:0:32 Elapsed Time, 10361 HSPs Collected - RECON: Running imagespread.. RECON Elapsed: 0:0:0 Elapsed Time - RECON: Running initial definition of elements ( eledef ).. RECON Elapsed: 0:0:1 Elapsed Time - RECON: Running re-definition of elements ( eleredef ).. eleredef failed. Exit code 768
Thanks.
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