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Old 10-12-2010, 02:57 AM   #21
ganga.jeena
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Dear Temima,
Whts the configuration of ur machine?
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Old 10-12-2010, 11:55 PM   #22
Temima
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How many reads are you giving velvet?
The program itself is limited in the number of reads it can handle, even if your machine isn't.
I'm working on the cluster located on our solid 3 machine. not optimal, but an ok temporary solution.
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Old 03-14-2011, 06:30 AM   #23
ioannis
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Dear Temima,

I wonder whether you have found a solution with the denovoadp problem. I am running into the same problem "reads match to negative position".

Best,
Ioannis
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Old 03-15-2011, 04:14 AM   #24
Temima
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SOLiD support suggested a new tool called Cortex which is supposed to be uploaded to sourceforge soon. So far, it's not there.

http://sourceforge.net/projects/cortexassembler/files/
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Old 03-15-2011, 01:04 PM   #25
sklages
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They put a source tarball into SVN,
http://cortexassembler.svn.sourceforge.net/
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