Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
abyss error zjrouc Bioinformatics 8 07-09-2013 01:35 PM
ERROR Read ID No_name present in file 0 and... SimonRGC General 0 06-18-2013 06:46 AM
SOAPdenovotrans file read error LJ_ngs Bioinformatics 1 02-12-2013 12:40 AM
abyss-pe error jjjscuedu Bioinformatics 2 06-02-2012 07:02 AM
SOAPaligner problem: Query File Error: Can't read peromhc Bioinformatics 7 04-26-2011 02:04 AM

Thread Tools
Old 06-06-2014, 12:30 PM   #1
Location: Walnut, California

Join Date: Dec 2012
Posts: 39
Default abyss-pe Read File Error:


I am trying to run abyss-pe but I get the following error:

0: Reading `../../GerRegGA/GerRegina_1_trimmed.fastq'...
1: Reading `../../GerRegGA/GerRegina_2_trimmed.fastq'...
2: Reading `../../GerRegHS/GerRegina_HS_1_trimmed.fastq'...
3: Reading `../../GerRegHS/GerRegina_HS_2_trimmed.fastq'...
../../GerRegHS/GerRegina_HS_2_trimmed.fastq:5: error: Expected either `>' or `@' or 11 fields
and saw `
' and 0 fields near

Have anyone encounter this error before? Please advice.

Thank you,

milo0615 is offline   Reply With Quote

abyss, abyss-pe, error, expected, file error

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:24 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO