Tweet
Hi,
is there away to have bowtie report the summary of reads processed and aligned to a file?
thanks,
is there away to have bowtie report the summary of reads processed and aligned to a file?
thanks,
-
-
Hi,
you can simply redirect the output to a file using
after the bowtie call> output.txt
or you can use the pipe (|) and shell commands like grep, head, tail, awk etc. to filter the output. e.g.
...| grep "aligned reads" > output.txtLast edited by hanshart; 01-04-2012, 04:37 AM.
-
Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...04-04-2024, 04:25 PM -
Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...03-22-2024, 06:39 AM
Comment