I downloaded from NCBI dbSNP a file, whose format is something like fasta. Here is one example:
>gnl|dbSNP|ss244318098 ss=244318098|pos=394|len=894|handle="BGI"|subid="Gm01-394"|taxid=3847|mol="Genomic"|class=1|alleles="A/C"
GGTTTGGTGTTTGGGTTTTAGGTTTTAGGTTTTAGGTTTTACGGTTTAGGGTTTATGGTTTATGGTTTAGGGTTTAGGGT
TAGGAAATAATTTGGGTCTTTCATCTTTCAACAAAAAATTAAGGGATTTAGAGTAATTTTTAGGGTTTAGGGTTTAAGGT
TTTAGGTTTCGGGTTTGGGTTTTAGATTTTACGGCTTACGGTTTAAAGTTTAGGGGTTAGGGTTTAGGGTTTAGAAATAA
ATTTGAGTGTTTGACATTTGAACACAAAATTAAGGCATTTAGAGTCATTTTTAGGGTTTACGGTTTAGGGTTTAGCAAGA
AATTTCGGTGTTTCATCTTCGAACACAAAATTAAGGCAGTTAAAGTCTTTTTTTGGGTTTAGGGTTTAGGGTT
M
TTTGCCTGGGTGTGCCAGTGGCGTGAGCAAATGGAGGGCGGCCATTTCTCATGTTTGGACGTCAAAGAACCCATAAAAAA
TAGTCCTGTTCCCCGGTTTCGTCAACTAACACGTAAAAACAATGCCTTAACACAAAATTAAGGCATTTAGAGGCATTTTT
AGGGTTTACGGTTTAGGGTTTACCAAGAAATTTCGGTGTTTCATCTTTGAACACAAAATTAAGGCAGTTAAAGTCTTTTT
I was confused by "class=1“ in the header and "M" in the body. What are their meanings? How to transfer this format to VCF format? I can't find VCF file of soybean. Thank you very much.
>gnl|dbSNP|ss244318098 ss=244318098|pos=394|len=894|handle="BGI"|subid="Gm01-394"|taxid=3847|mol="Genomic"|class=1|alleles="A/C"
GGTTTGGTGTTTGGGTTTTAGGTTTTAGGTTTTAGGTTTTACGGTTTAGGGTTTATGGTTTATGGTTTAGGGTTTAGGGT
TAGGAAATAATTTGGGTCTTTCATCTTTCAACAAAAAATTAAGGGATTTAGAGTAATTTTTAGGGTTTAGGGTTTAAGGT
TTTAGGTTTCGGGTTTGGGTTTTAGATTTTACGGCTTACGGTTTAAAGTTTAGGGGTTAGGGTTTAGGGTTTAGAAATAA
ATTTGAGTGTTTGACATTTGAACACAAAATTAAGGCATTTAGAGTCATTTTTAGGGTTTACGGTTTAGGGTTTAGCAAGA
AATTTCGGTGTTTCATCTTCGAACACAAAATTAAGGCAGTTAAAGTCTTTTTTTGGGTTTAGGGTTTAGGGTT
M
TTTGCCTGGGTGTGCCAGTGGCGTGAGCAAATGGAGGGCGGCCATTTCTCATGTTTGGACGTCAAAGAACCCATAAAAAA
TAGTCCTGTTCCCCGGTTTCGTCAACTAACACGTAAAAACAATGCCTTAACACAAAATTAAGGCATTTAGAGGCATTTTT
AGGGTTTACGGTTTAGGGTTTACCAAGAAATTTCGGTGTTTCATCTTTGAACACAAAATTAAGGCAGTTAAAGTCTTTTT
I was confused by "class=1“ in the header and "M" in the body. What are their meanings? How to transfer this format to VCF format? I can't find VCF file of soybean. Thank you very much.
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