Hi there,
Checking out the 454 output file 454AllContigs.fna I've found out some errors in contig length. There are some cases where the contig length written in the fasta header is clearly different from the actual contig length, sometimes bigger, sometimes smaller. An example
>contig04402 length=72 numreads=580 gene=isogroup00010 status=isotig
ttgtattgaatgcactgaTCTGGGGTgAGAAATCTTCTGGTGCTgtACCTTTTGGGACTA
TGTTTGCTTtGGTcTTTTTGtGGTTtGGAATTTCCGTGCccTtGGTTTTTATTGGCAGct
ACTTTGGCTACAAGAAACCTGCAATTGAagATCCAGTGAAAACAAACAAAATTCCCAGGC
AAATT
Does anyone know what could be happening?
Thanks
Marina
Checking out the 454 output file 454AllContigs.fna I've found out some errors in contig length. There are some cases where the contig length written in the fasta header is clearly different from the actual contig length, sometimes bigger, sometimes smaller. An example
>contig04402 length=72 numreads=580 gene=isogroup00010 status=isotig
ttgtattgaatgcactgaTCTGGGGTgAGAAATCTTCTGGTGCTgtACCTTTTGGGACTA
TGTTTGCTTtGGTcTTTTTGtGGTTtGGAATTTCCGTGCccTtGGTTTTTATTGGCAGct
ACTTTGGCTACAAGAAACCTGCAATTGAagATCCAGTGAAAACAAACAAAATTCCCAGGC
AAATT
Does anyone know what could be happening?
Thanks
Marina
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