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11-08-2011, 12:53 PM
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#1 |
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Member
Location: Atlanta, US Join Date: Jan 2010
Posts: 59
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FASTX quality plot error
Hi all,
I am using FASTX tool kit to for the quality control. When I run fastq_quality_boxplot_graph.sh script on the quality stats file, I get following two strange errors: line 0: undefined variable: inside and gnuplot> plot 'my_input_file' using 1:7:11:12:9 with candlesticks lt 1 lw 1 title 'Quartiles' whiskerbars, '' using 1:8:8:8:8 with candlesticks lt -1 lw 2 title 'Medians' ^ line 0: ';' expected Any suggestions? Thanks. |
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11-16-2011, 03:57 PM
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#2 |
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Junior Member
Location: boston Join Date: Nov 2011
Posts: 1
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Hi Vinay -- did you ever resolve this issue? I am encountering it as well.
Thanks -T |
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11-18-2011, 08:26 AM
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#3 |
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Member
Location: Atlanta, US Join Date: Jan 2010
Posts: 59
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I figured my GNU plot libraries were missing. I installed them and it worked.
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| Tags |
| fastx, plot, quality control, sequencing |
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