Hi there,
My first post here and that will be a question.
We got data from the Illumina platform and I used BWA to align my reads on the reference genome, which generated BAM files at the end. I would like to visualize my data using Artemis but I cannot load my BAM file. Indeed, I receive this message :
"failed to open Organism.pe.bam.SORTED.bam: cannot recognise format of binary file"
I dont understand why ... The BAM file seems to be OK since I managed to open it with a bunch of different software.
I do have the latest version of Artemis+ACT+ Java, and I did index and sort my BAM file.
Any help would be appreciated.
Thanks
Toni
My first post here and that will be a question.
We got data from the Illumina platform and I used BWA to align my reads on the reference genome, which generated BAM files at the end. I would like to visualize my data using Artemis but I cannot load my BAM file. Indeed, I receive this message :
"failed to open Organism.pe.bam.SORTED.bam: cannot recognise format of binary file"
I dont understand why ... The BAM file seems to be OK since I managed to open it with a bunch of different software.
I do have the latest version of Artemis+ACT+ Java, and I did index and sort my BAM file.
Any help would be appreciated.
Thanks
Toni
Comment