Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Some questions about running tophat & cufflinks songyj Bioinformatics 8 09-05-2012 07:09 AM
Manager High Performance Computing position at New York Genome Center Guevara Rowand Academic/Non-Profit Jobs 0 02-07-2012 11:59 AM
some questions about running tophat & cufflinks songyj RNA Sequencing 0 10-18-2011 06:07 PM
High Performance Computing Systems Administrator at New York University ashish Academic/Non-Profit Jobs 0 08-03-2011 11:01 AM
Biogemma, GenomeQuest, and SGI Create First High-Performance Computing Solution... GenomeQuest Vendor Forum 0 12-22-2010 07:03 AM

Thread Tools
Old 01-24-2012, 07:12 AM   #1
Location: Milano, Italy

Join Date: Aug 2011
Posts: 93
Default High performance computing & Tophat & Cufflinks

Dear All,
TopHat and Cufflinks support High Performance Computing?
Any clues?
paolo.kunder is offline   Reply With Quote
Old 01-24-2012, 09:02 AM   #2
Senior Member
Location: Charlottesville, VA

Join Date: May 2011
Posts: 112

See the -p option in the documentation.

I believe Bowtie/Tophat/Cufflinks uses pthreads for threading. That is an SMP (symmetric multiprocessing, i.e. shared memory) threading mechanism. It's important to understand the difference between SMP threading and distributed computing. SMP threading has one thread per core (or hyperthread - a hardware mechanism for making one core act like two).
turnersd is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 09:02 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO