Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
GATK still does not support cigar N from tophat? Mark.hz Bioinformatics 0 11-06-2011 10:37 PM
tracking Illumina read pair information SES Bioinformatics 1 10-18-2011 07:40 AM
first read in a pair means F3 or R3? yhong General 1 08-24-2011 10:10 AM
CIGAR should have zero elements for unmapped read doc2r Bioinformatics 2 01-19-2011 09:44 AM
samtools view error: CIGAR and sequence length are inconsistent (tophat/bowtie) glacierbird Bioinformatics 2 06-29-2010 02:58 AM

Thread Tools
Old 02-16-2011, 04:33 AM   #1
Location: Ireland

Join Date: Jan 2011
Posts: 13
Default Tophat :: CIGAR for second read in pair

Hi SEQers,

Is it correct to say that, when performing an alignment with paired-ended reads, that the CIGAR alignment data for the second read is lost?


polarise is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:55 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO