Dear NGS Users,
I have a question about GATK unified genotyper.
How can I set allele frequency threshold in the variant calling?
For example,
Reference sequence T
GATK calls T>C variant with 80count per T e 7count for C.
I would like to set a minor allele frequency of 25% for the calls.
Anyone has any idea?
Thanks a lot
I have a question about GATK unified genotyper.
How can I set allele frequency threshold in the variant calling?
For example,
Reference sequence T
GATK calls T>C variant with 80count per T e 7count for C.
I would like to set a minor allele frequency of 25% for the calls.
Anyone has any idea?
Thanks a lot
Comment