There are many kmer counting software. If just to find repeats, can I just use someone that can count frequency and can give the kmer position in the genome(or reads), and then align the high frequency kmers? Some software just output the kmer counts, I don't know which software can output the kmer position along with the kmer counts.
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Originally posted by Rui Guo View PostThank you. I think mapping back is redundant because when counting it can also do that. I will try to find some other ways to do that.savetherhino.org
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