Hello,
Does anyone have advice on what software suites are currently available to analyze expressed SNPs in Illumina RNA-Seq data? I have been trying ERANGEv3.1, but it is very slow in our NFS-based setup. The only other option I am aware of is CASAVA, for which I believe version 1.6 is a couple of weeks away from release. Are there other options that anyone has used and liked? Any advice would be much appreciated.
Thanks,
Shurjo
Does anyone have advice on what software suites are currently available to analyze expressed SNPs in Illumina RNA-Seq data? I have been trying ERANGEv3.1, but it is very slow in our NFS-based setup. The only other option I am aware of is CASAVA, for which I believe version 1.6 is a couple of weeks away from release. Are there other options that anyone has used and liked? Any advice would be much appreciated.
Thanks,
Shurjo