Frag-smallIndel and CNV:

JohnK · 07-30-2010, 11:45 AM

I've tried to find the hs_CNV_data file at the solidsofwaretools.com website to no avail. Could someone shed some light as to where I can find it? I've downloaded, unzip'ed all the files under CNV tool and can't seem to find that directory or the specified, provided cmap file. I would also like to know where to find the .bmc files as well as the p-arm/q-arm sizes that are specified in the cmap file from the solidsoftwaretools.com website:

#data.dir=../data
seqId seqName Fasta_File Double_Encoded_File_Name P-Arm_Range Q-Arm_Range 25mer_Frag_Mappability_files 50mer_Frag_Mappability_files 50x2_MP_Mappability_files
11 chr11 seqs/chr11.fa - 50000-50740429 54450781-134452095 Mappability/25.2/chr11.bmc Mappability/50.2/chr11.bmc Mappability/MP_50x2/chr11.bmc

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07-30-2010, 11:45 AM	#1
JohnK Senior Member Location: Los Angeles, China. Join Date: Feb 2010 Posts: 106	Frag-smallIndel and CNV: I've tried to find the hs_CNV_data file at the solidsofwaretools.com website to no avail. Could someone shed some light as to where I can find it? I've downloaded, unzip'ed all the files under CNV tool and can't seem to find that directory or the specified, provided cmap file. I would also like to know where to find the .bmc files as well as the p-arm/q-arm sizes that are specified in the cmap file from the solidsoftwaretools.com website: #data.dir=../data seqId seqName Fasta_File Double_Encoded_File_Name P-Arm_Range Q-Arm_Range 25mer_Frag_Mappability_files 50mer_Frag_Mappability_files 50x2_MP_Mappability_files 11 chr11 seqs/chr11.fa - 50000-50740429 54450781-134452095 Mappability/25.2/chr11.bmc Mappability/50.2/chr11.bmc Mappability/MP_50x2/chr11.bmc Last edited by JohnK; 07-30-2010 at 12:57 PM.