Dear colleagues,
I am trying to display the variants annotations along with predictions of exonic aberrant isoforms in IGV and can't make it to display color. Moreover, only gene field in the GFF3 last description column is actually used for display, which I would like to replace with the field like note=... Is there way to make it better (I though using track description may help but so far it didn't)?
I am trying to display the variants annotations along with predictions of exonic aberrant isoforms in IGV and can't make it to display color. Moreover, only gene field in the GFF3 last description column is actually used for display, which I would like to replace with the field like note=... Is there way to make it better (I though using track description may help but so far it didn't)?
Code:
##gff-version 3 #track name="Aberrant splicing" color=FF0000 gffTags=on chr10 varclass splicingVariants 100018766 100018821 . - . Var=0.1->0.07;gene=Overlapping exon change (0.1->0.07);ref=novel;InRegion;color=FF0000 chr10 varclass splicingVariants 100018844 100018844 . + . Var=G->A;gene=G->A;ref=novel;InRegion;color=FF0000 chr10 varclass splicingVariants 100018766 100018832 . - . Var=0.07;gene=Exon compromising is created (0.07);ref=novel;InRegion;color=FF0000
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