Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
Collapse
 
  • Page of 1
  • Filter
  • Time
  • Show
Clear All
new posts
Previous template Next
  • #1

    question about GATK tranches plot

    Hi, after running GATK VQSR recalibration, the program generated a plot for the tranches used for training. It looks a bit weird for me, and do you have any comments on it? Can I use the results? or what shall I do to improve the snp-calling?

    Thanks a lot for your advice.
    Attached Files
    Tags: None
  • #2
    Hello, I made the plot available now. Could you please take a look, and give some comments on it? Is the plot okay? I just feel it is a bit weird...
    Thanks!

    Comment

    Previous template Next

    Latest Articles

    Collapse
    • seqadmin
      Essential Discoveries and Tools in Epitranscriptomics
      by seqadmin


      The field of epigenetics has traditionally concentrated more on DNA and how changes like methylation and phosphorylation of histones impact gene expression and regulation. However, our increased understanding of RNA modifications and their importance in cellular processes has led to a rise in epitranscriptomics research. “Epitranscriptomics brings together the concepts of epigenetics and gene expression,” explained Adrien Leger, PhD, Principal Research Scientist on Modified Bases...
      Yesterday, 07:01 AM
    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM
    View All

    ad_right_rmr

    Collapse

    News

    Collapse
    Topics Statistics Last Post
    Cancer Metastasis: A Deep Dive into Cellular Plasticity by seqadmin
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    55 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-11-2024, 12:08 PM  
    Proteogenomic Profiles Offer New Clues in Prostate Cancer by seqadmin
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    51 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-10-2024, 10:19 PM  
    Novel Diagnostic Assay Enhances Ovarian Cancer Detection by seqadmin
    Started by seqadmin, 04-10-2024, 09:21 AM
    0 responses
    45 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-10-2024, 09:21 AM  
    Evolutionary Dynamics of Centromeres: A Comparative Genomic Analysis by seqadmin
    Started by seqadmin, 04-04-2024, 09:00 AM
    0 responses
    55 views
    0 likes
    		 Last Post seqadmin
    by seqadmin
    04-04-2024, 09:00 AM  
    View All
    Working...
    X