Hi All
I finish the Tuxedo pipeline on my data.
tophat2-cufflinks-cuffmerge-cuffdiff
I got the cuffdiff result 'gene_exp.diff', I found that some of the rows are like below:
test_id gene_id gene p_value q_value
XLOC_015858 XLOC_015858 Q27U16_BOVIN,Q3MJK3_BOVIN 5e-05 0.00449882
When I go back annotation file check , I found that in the genes.gtf
ENSBTAG00000005251 Q27U16_BOVIN
ENSBTAG00000038536 Q3MJK3_BOVIN
It seem that they are different genes...
Is it normal? I mean Two gene names with one gene ID?
Thank you!
I finish the Tuxedo pipeline on my data.
tophat2-cufflinks-cuffmerge-cuffdiff
I got the cuffdiff result 'gene_exp.diff', I found that some of the rows are like below:
test_id gene_id gene p_value q_value
XLOC_015858 XLOC_015858 Q27U16_BOVIN,Q3MJK3_BOVIN 5e-05 0.00449882
When I go back annotation file check , I found that in the genes.gtf
ENSBTAG00000005251 Q27U16_BOVIN
ENSBTAG00000038536 Q3MJK3_BOVIN
It seem that they are different genes...
Is it normal? I mean Two gene names with one gene ID?
Thank you!
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