Go Back   SEQanswers > Applications Forums > RNA Sequencing

Similar Threads
Thread Thread Starter Forum Replies Last Post
Trio-based analysis: pipeline for phasing the data newbird General 0 05-05-2015 09:10 AM
RNA-Seq data analysis pipeline preet Introductions 14 02-14-2014 12:07 PM
PubMed: The statistics of bulk segregant analysis using next generation sequencing. Newsbot! Literature Watch 0 03-16-2012 08:50 PM
Galaxy - bulk download Jerzy Bioinformatics 1 02-21-2012 12:35 PM

Thread Tools
Old 03-07-2016, 07:17 PM   #1
Junior Member
Location: Taipei

Join Date: Aug 2015
Posts: 6
Default How to download bulk fastq data for Analysis Pipeline


I am looking for tutorial or step by step guide to download RNA-Seq data in bulk from DBs like GEO/SRA or Encode and directly put it in the analysis pipeline. (A kind of automated system which runs when initiated by direct data feed.

If anyone could help, it would be really great.

rajeev.vikram is offline   Reply With Quote
Old 03-17-2016, 01:27 AM   #2
Junior Member
Location: Los Angeles

Join Date: Mar 2016
Posts: 7

For data from public database, you always need to do data quality check to make sure you get the right input for your pipeline.
InDel is offline   Reply With Quote

rna sequencing, rna-seq advice, rna-seq beginner

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 03:51 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO