I have multiple Illumina Hi-seq 2000 fastq.gz files for each individual as follows;
sample1 lane1 read 1_001
sample1 lane1 read 1_002
sample1 lane1 read 2_001
sample1 lane1 read 2_002
sample1 lane2 read 1_001
sample1 lane2 read 1_002
sample1 lane2 read 2_001
sample1 lane2 read 2_002
sample1 lane3 read 1_001
sample1 lane3 read 1_002
sample1 lane3 read 2_001
sample1 lane3 read 2_002
they are all for a single individual. what script in Linux console would be best to merge all files in a final merged file? the idea is to do analysis in Galaxy.
THank you all.
sample1 lane1 read 1_001
sample1 lane1 read 1_002
sample1 lane1 read 2_001
sample1 lane1 read 2_002
sample1 lane2 read 1_001
sample1 lane2 read 1_002
sample1 lane2 read 2_001
sample1 lane2 read 2_002
sample1 lane3 read 1_001
sample1 lane3 read 1_002
sample1 lane3 read 2_001
sample1 lane3 read 2_002
they are all for a single individual. what script in Linux console would be best to merge all files in a final merged file? the idea is to do analysis in Galaxy.
THank you all.
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