Hello!
I am having whole genome sequenced metagenomic data that is assembled using meta-velevt. I want to check taxonomic classification using MgRAST. I need to know that whether I should use raw reads or assembled contigs for taxonomy classification as I am interested in showing functional annotation using assembled contigs.
Please help me in clearing this confusion that which is better way for taxonomy classification; raw reads or assembled contigs?
Best regards
I am having whole genome sequenced metagenomic data that is assembled using meta-velevt. I want to check taxonomic classification using MgRAST. I need to know that whether I should use raw reads or assembled contigs for taxonomy classification as I am interested in showing functional annotation using assembled contigs.
Please help me in clearing this confusion that which is better way for taxonomy classification; raw reads or assembled contigs?
Best regards
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