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Old 11-14-2021, 04:59 PM   #1
Location: San Francisco, CA

Join Date: Aug 2011
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Post Article Collection SEQC2 Consortium: multi-center cross-platform benchmark data sets

The Somatic Mutation Working Group of the FDA-led MAQC/SEQC2 Consortium has released the multi-center and cross-platform whole-genome and whole-exome reference sequencing data sets of one pair of tumor-normal breast cancer cell lines (HCC1395 and HCC1395BL). These resources can be used to produce machine learning models and bioinformatic methods related to somatic mutation detections. The data descriptor is published in Scientific Data. All the raw sequencing data are on SRA:SRP162370. Additionally, some of the BWA MEM aligned BAM files are also available on NCBI's FTP server.

The genomic DNA was produced in a single batch by ATCC to ensure sample homogeneity, i.e., the same DNA material with the same genome content was being sequenced in every replicate. The following are some of the working group's papers that have used those data sets:

Find all of SEQC2's publications:

The MAQC website
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reference samples, somatic mutations

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