Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
Converting VCF to PLINK PED format, need help? ketan_bnf Bioinformatics 2 03-21-2017 02:35 AM
plink files to vcf conversion Vanisha Bioinformatics 10 03-13-2017 11:48 PM
BAM to VCF conversion ashwatha Bioinformatics 6 10-07-2013 08:03 AM
Is SRA format to vcf conversion possible Bioinformatics 3 05-29-2012 08:42 PM
How to convert VCF to PED emilyjia2000 Bioinformatics 0 12-19-2011 02:39 PM

Thread Tools
Old 04-12-2013, 05:17 PM   #1
Junior Member
Location: Nijmegen, the Netherlands

Join Date: Oct 2012
Posts: 5
Default vcf to ped conversion

I'm trying to convert vcf files to ped files, but I get a weird error.

I execute:
vcftools --gzvcf chr23.phase1_release_v3.20101123.snps_indels_svs.genotypes.refpanel.EUR.nosingles.vcf.gz --chr X --plink --out chr23
And I get the following error:
Using zlib version: 1.2.3
Versions of zlib >= 1.2.4 will be *much* faster when reading zipped VCF files.
Reading Index file.
File contains 406938 entries and 379 individuals.
Filtering by chromosome.
terminate called after throwing an instance of 'std::bad_alloc'
  what():  St9bad_alloc
Has anyone ever seen this error? How can I convert my file to ped format?
vmrosario is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:06 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO