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Old 11-30-2013, 06:48 PM   #1
diego diaz
Location: Santiago, Chile

Join Date: Oct 2013
Posts: 62
Default How to construct a phylogenetic tree from a binary matrix


I need to generate a phylogenetic tree from a binary matrix.

First, i mapped the reads to the reference genome, then, i made the SNP calling with samtools, finally, i wrote a small script in perl to construct the matrix.

I have seen that there is a R package called "ape" that i can use for this purpose. I downloaded and installed it, but i don't know how to use it, i don't know much about R.

Anyone know how to get the tree from the binary matrix with ape?

thanks in advance.
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